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Effective reduction of a three-dimensional circadian oscillator model

  • * Corresponding author: Shuang Chen

    * Corresponding author: Shuang Chen 
This work was partly supported by the NSFC grants 11531006, 11771449, 11771161, and the Hubei provincial postdoctoral science and technology activity project
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  • We investigate the dynamics of a three-dimensional system modeling a molecular mechanism for the circadian rhythm in Drosophila. We first prove the existence of a compact attractor in the region with biological meaning. Under the assumption that the dimerization reactions are fast, in this attractor we reduce the three-dimensional system to a simpler two-dimensional system on the persistent normally hyperbolic slow manifold.

    Mathematics Subject Classification: Primary: 34C45, 34A26; Secondary: 34C20.

    Citation:

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  • Figure 1.  The mechanism for the circadian oscillator model (1). Adapted from [33]

    Figure 2.  The attraction of the slow manifold. The surface is the critical manifolds $ \mathcal{M}_{0} $, which is the zeroth-order approximation of the slow manifold, and the discrete orbits, respectively, start from $ (10,10,2) $, $ (15,15,2) $, $ (20,20,2) $, $ (10,20,2) $ and $ (20,10,2) $. Here $ k_{a} = 20000 $, $ k_{d} = 100 $ and the remaining parameters in (2) are chosen as in [33,Table 1,p.2414], that is, $ v_{m} = 1 $, $ k_{3} = k_{m} = 0.1 $, $ v_{p} = 0.5 $, $ k_{1} = 10 $, $ k_{2} = 0.03 $, $ P_{c} = 0.1 $ and $ J_{p} = 0.05 $. System (16) with $ \widetilde{k}_{2} = 1 $ has small parameter $ \varepsilon = 0.0003 $

  • [1] S. BoieV. KirkJ. Sneyd and M. Wechselberger, Effects of quasi-steady-state reduction on biophysical models with oscillations, J. Theoret. Biol., 393 (2016), 16-31.  doi: 10.1016/j.jtbi.2015.12.011.
    [2] S. N. Chow and J. K. Hale, Methods of Bifurcation Theory, Springer, New York, 1982.
    [3] B. Deng, The Šil'nikov problem, exponential expansion, strong $\lambda$-lemma, $C^{1}$ linearization, and homoclinic bifurcation, J. Differential Equations, 79 (1989), 189-231.  doi: 10.1016/0022-0396(89)90100-9.
    [4] B. Deng and G. Hines, Food chain chaos due to transcritical point, Chaos, 13 (2003), 578-585.  doi: 10.1063/1.1576531.
    [5] Z. DuJ. Li and X. Li, The existence of solitary wave solutions of delayed Camassa-Holm equation via a geometric approach, J. Funct. Anal., 275 (2018), 988-1007.  doi: 10.1016/j.jfa.2018.05.005.
    [6] F. Dumortier and R. Roussarie, Canard Cycles and Center Manifolds, Mem. Amer. Math. Soc., Vol. 577, Providence, 1996. doi: 10.1090/memo/0577.
    [7] F. Dumortier, J. Llibre and J. C. Artés, Qualitative Theory of Planar Differential Systems, Springer-Verlag, Berlin, 2006.
    [8] J. Dunlap, Molecular bases for circadian clocks, Cell, 96 (1999), 271-290.  doi: 10.1016/S0092-8674(00)80566-8.
    [9] N. Fenichel, Persistence and smoothness of invariant manifolds for flows, Indiana Univ. Math. J., 21 (1971), 193-226.  doi: 10.1512/iumj.1972.21.21017.
    [10] N. Fenichel, Asymptotic stability with rate conditions, Indiana Univ. Math. J., 23 (1974), 1109-1137.  doi: 10.1512/iumj.1974.23.23090.
    [11] N. Fenichel, Asymptotic stability with rate conditions. II, Indiana Univ. Math. J., 26 (1977), 81-93.  doi: 10.1512/iumj.1977.26.26006.
    [12] N. Fenichel, Geometric singular perturbation theory for ordinary differential equations, J. Differential Equations, 31 (1979), 53-98.  doi: 10.1016/0022-0396(79)90152-9.
    [13] D. B. ForgerBiological Clocks, Rhythms, and Oscillations, MIT Press, Cambridge, MA, 2017. 
    [14] A. GoekeS. Walcher and E. Zerz, Determining "small parameters" for quasi-steady state, J. Differential Equations, 259 (2015), 1149-1180.  doi: 10.1016/j.jde.2015.02.038.
    [15] D. Gonze, Modeling circadian clocks: From equations to oscillations, Cent. Eur. J. Bio., 6 (2011), 699-711.  doi: 10.2478/s11535-011-0061-5.
    [16] D. A. Goussis and H. N. Najm, Model reduction and physical understanding of slowly oscillating processes: The circadian cycle, Multiscale Model. Simul., 5 (2006), 1297-1332.  doi: 10.1137/060649768.
    [17] G. Hek, Geometric singular perturbation theory in biological practice, J. Math. Biol., 60 (2010), 347-386.  doi: 10.1007/s00285-009-0266-7.
    [18] C. K. R. T. Jones, Geometric Singular Perturbation Theory, in Dynamical Systems (eds. R. Johnson), Lecture Notes in Math., Springer, Berlin, 1609 (1995), 44–118. doi: 10.1007/BFb0095239.
    [19] C. K. R. T. JonesT. J. Kaper and N. Kopell, Tracking invariant manifolds up to exponentially small errors, SIAM J. Math. Anal., 27 (1996), 558-577.  doi: 10.1137/S003614109325966X.
    [20] H. G. Kaper and T. J. Kaper, Asymptotic analysis of two reduction methods for systems of chemical reactions, Phys. D, 165 (2002), 66-93.  doi: 10.1016/S0167-2789(02)00386-X.
    [21] J. Keener and J. Sneyd, Mathematical Physiology, Int. Appl. Math., 8, Springer-Verlag, New York, 1998. doi: 10.1007/978-0-387-79388-7.
    [22] I. Kosiuk and P. Szmolyan, Geometric analysis of the Goldbeter minimal model for the embryonic cell cycle, J. Math. Biol., 72 (2016), 1337-1368.  doi: 10.1007/s00285-015-0905-0.
    [23] M. Krupa and P. Szmolyan, Extending geometric singular perturbation theory to nonhyperbolic points-fold and canard points in two dimensions, SIAM J. Math. Anal., 33 (2001), 286-314.  doi: 10.1137/S0036141099360919.
    [24] M. Krupa and P. Szmolyan, Relaxation oscillation and canard explosion, J. Differential Equations, 174 (2001), 312-368.  doi: 10.1006/jdeq.2000.3929.
    [25] C. Kuehn, Multiple Time Scale Dynamics, Appl. Math. Sci., 191, Springer, Swizerland, 2015. doi: 10.1007/978-3-319-12316-5.
    [26] C. Li and H. Zhu, Canard cycles for predator-prey systems with Holling types of functional response, J. Differential Equations, 254 (2013), 879-910.  doi: 10.1016/j.jde.2012.10.003.
    [27] W. Liu, Exchange lemmas for singular perturbation problems with certain turning points, J. Differential Equations, 67 (2000), 134-180.  doi: 10.1006/jdeq.2000.3778.
    [28] U. Maas and S. Pope, Simplifying chemical kinetics: Intrinsic low dimensional manifolds in composition space, Combust. Flame, 88 (1992), 239-264.  doi: 10.1016/0010-2180(92)90034-M.
    [29] D. McMillenN. KopellJ. Hasty and J. Collins, Synchronizing genetic relaxation oscillators by intercell signaling, Proc. Natl. Acad. Sci. USA, 99 (2002), 679-684. 
    [30] J. E. Rubin and D. Terman, Geometric singular perturbation analysis of neuronal dynamics, in Handbook of Dynamical Systems, North-Holland, Amsterdam, 2 (2002), 93–146. doi: 10.1016/S1874-575X(02)80024-8.
    [31] S. Schecter, Exchange lemmas 1: Deng's lemma, J. Differenital Equations, 245 (2008), 392-410.  doi: 10.1016/j.jde.2007.08.011.
    [32] S. Schecter, Exchange lemmas 2: General exchange lemma, J. Differenital Equations, 245 (2008), 411-441.  doi: 10.1016/j.jde.2007.10.021.
    [33] J. TysonC. HongC. Thron and B. Novak, A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM, Biophys. J., 77 (1999), 2411-2417.  doi: 10.1016/S0006-3495(99)77078-5.
    [34] S. Wiggins, Normally Hyperbolic Invariant Manifolds in Dynamical Systems, Appl. Math. Sci., 105, Springer-Verlag, New York, 1994. doi: 10.1007/978-1-4612-4312-0.
    [35] Z. Zhang, T. Ding, W. Huang and Z. Dong, Qualitative Theory of Differential Equations, Transl. Math. Monographs, 101, Amer. Math. Soc., Providence, 1992. doi: 10.1007/978-1-4757-4969-4_4.
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