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Learning landmark geodesics using the ensemble Kalman filter

  • * Corresponding author: Andreas Bock

    * Corresponding author: Andreas Bock 
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  • We study the problem of diffeomorphometric geodesic landmark matching where the objective is to find a diffeomorphism that, via its group action, maps between two sets of landmarks. It is well-known that the motion of the landmarks, and thereby the diffeomorphism, can be encoded by an initial momentum leading to a formulation where the landmark matching problem can be solved as an optimisation problem over such momenta. The novelty of our work lies in the application of a derivative-free Bayesian inverse method for learning the optimal momentum encoding the diffeomorphic mapping between the template and the target. The method we apply is the ensemble Kalman filter, an extension of the Kalman filter to nonlinear operators. We describe an efficient implementation of the algorithm and show several numerical results for various target shapes.

    Mathematics Subject Classification: Primary: 62F15, 65C05; Secondary: 34A55.


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  • Figure 1.  A matching between landmarks where the geodesics are shown

    Figure 2.  Template-target configurations for different values of $ M $. Left to right: 10, 50, 150. Linear interpolation has been used between the landmarks to improve the visualisation

    Figure 3.  Log data misfits for $ M = N_E = 50 $ for different values of $ \xi $ using three different targets

    Figure 4.  Progression of Algorithm 1 for various targets using $ M = 10 $ and $ N_E = 10 $. Computation times for 50 iterations: 6s for each configuration

    Figure 5.  Progression of Algorithm 1 for various targets using $M = 50$ and $N_E = 50$. Computation times for 50 iterations (top to bottom): 2m8s, 2m9s, 1m29s

    Figure 6.  Progression of Algorithm 1 for various targets using $ M = 150 $ and $ N_E = 100 $. Computation times for 50 iterations (top to bottom): 5m22s, 5m23s, 5m23s

    Figure 7.  Convergence of $ E^k $ where $ M = 10 $

    Figure 8.  Convergence of $ E^k $ where $ M = 50 $

    Figure 9.  Convergence of $ E^k $ where $ M = 150 $

    Figure 10.  Evolution of the relative error $ \mathcal{R}^k $ corresponding to the misfits in Figure 7 where $ M = 10 $

    Figure 11.  Evolution of the relative error $ \mathcal{R}^k $ corresponding to the misfits in Figure 8 where $ M = 150 $

    Figure 12.  Evolution of the relative error $ \mathcal{R}^k $ corresponding to the misfits in Figure 9 where $ M = 50 $

    Table 1.  Global parameters used for Algorithm 1

    Variable Value Description
    $ n $ 50 Kalman iterations
    $ T $ 15 time steps
    $ \tau $ 1 landmark size (cf. (2))
    $ \epsilon $ 1e-05 absolute error tolerance
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    Table 2.  Relative error at the last iteration of algorithm 1 for different values of $ N_E $ for fixed $ M = 10 $. The rows correspond to the configurations in Figure 4

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    Table 3.  Relative error at the last iteration of algorithm 1 for different values of $ N_E $ for fixed $ M = 50 $. The rows correspond to the configurations in Figure 5

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    Table 4.  Relative error at the last iteration of algorithm 1 for different values of $ N_E $ for fixed $ M = 150 $. The rows correspond to the configurations in Figure 6

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